Update NixRawIO to strictly follow RawIO data structure#1250
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JuliaSprenger wants to merge 15 commits intoNeuralEnsemble:masterfrom
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Update NixRawIO to strictly follow RawIO data structure#1250JuliaSprenger wants to merge 15 commits intoNeuralEnsemble:masterfrom
JuliaSprenger wants to merge 15 commits intoNeuralEnsemble:masterfrom
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For the NixRawIO this implies - loading of a single block only (as in nix there is no reason to assume consistent channel/stream structure across blocks) - introducing checks for channel & id consistencies across segments - introducing `autogenerate_*` keyword argument for ignoring non-rawio compatible channel names and unit ids in nix files - add static `get_block_count` method to permit scanning of nix file for number of blocks - the `block_index` argument is now already required at IO initialization
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- adjust parameters for loading additional tests files - fix code layout
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@Kleinjohann Can you test this implementation with some of your nix files? |
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With https://gin.g-node.org/NeuralEnsemble/ephy_testing_data/pulls/100 merged, tests are passing now. |
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Hi! Thanks for the work! |
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Todos:
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@JuliaSprenger do you want to implement your "todo" item, or shall we merge now and fix that later? |
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This PR rewrites the IO to read only data that follow the RawIO restrictions. For loading old data
autogenerate_*keywords were introduced to permit loading data, but ignoring inconsistent channel / unit names. Since there is no structural relation between blocks in nix, it is only possible to load a single block at time. The substructure of that block has to follow the rawio constraints.This PR is requires test files added in https://gin.g-node.org/NeuralEnsemble/ephy_testing_data/pulls/100 .